Genome-based prediction of testcross values in maize

Albrecht, T. and Wimmer, V. and Auinger, Hans-Jürgen and et al, . (2011) Genome-based prediction of testcross values in maize. Theoretical and Applied Genetics, 123 (2). 339 -350.

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Abstract

This is the first large-scale experimental study on genome-based prediction of testcross values in an advanced cycle breeding population of maize. The study comprised testcross progenies of 1,380 doubled haploid lines of maize derived from 36 crosses and phenotyped for grain yield and grain dry matter content in seven locations. The lines were genotyped with 1,152 single nucleotide polymorphism markers. Pedigree data were available for three generations. We used best linear unbiased prediction and stratified cross-validation to evaluate the performance of prediction models differing in the modeling of relatedness between inbred lines and in the calculation of genome-based coefficients of similarity. The choice of similarity coefficient did not affect prediction accuracies. Models including genomic information yielded significantly higher prediction accuracies than the model based on pedigree information alone. Average prediction accuracies based on genomic data were high even for a complex trait like grain yield (0.72–0.74) when the cross-validation scheme allowed for a high degree of relatedness between the estimation and the test set. When predictions were performed across distantly related families, prediction accuracies decreased significantly (0.47–0.48). Prediction accuracies decreased with decreasing sample size but were still high when the population size was halved (0.67–0.69). The results from this study are encouraging with respect to genome-based prediction of the genetic value of untested lines in advanced cycle breeding populations and the implementation of genomic selection in the breeding process

Item Type: Article
Author Affiliation: Plant Breeding, Technische Universität München, Emil-Ramann-Straße 4, 85354, Freising, Germany
Subjects: Crop Improvement > Genetics
Crop Improvement > Plant Breeding
Divisions: Maize
Depositing User: Ms K Syamalamba
Date Deposited: 20 May 2013 07:50
Last Modified: 20 May 2013 07:50
Official URL: http://dx.doi.org/10.1007/s00122-011-1587-7
URI: http://eprints.icrisat.ac.in/id/eprint/10573

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