Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice

Shrestha, R. and Matteis, L. and Skofic, M. and et al, . (2012) Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice. Frontiers in Physiology, 3. pp. 1-10.

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Abstract

The Crop Ontology(CO) o fthe Generation Challenge Program (GCP)(http://cropontology.org/) is developed for the Integrated Breeding Platform(IBP)(https://www.integratedbreeding.net/) by several centers of The Consultative Group on International Agricultural Research (CGIAR):bioversity,CIMMYT,CIP,ICRISAT,IITA,and IRRI.Integrated breeding necessitates that breeders access genotypic and phenotypic data related to a given trait.The CO provides validated trait names used by the crop communities of practice(CoP)for harmonizing the annotation of phenotypic and genotypic data and thus supporting data accessibility and discovery through web queries.

Item Type: Article
Additional Information: To the breeders and data managers who develop the Crop ontology: Peter Kulakow, Bakare Moshood, Sam Ofodile, Ousmane Boukare, Antonio Lopez Montes(IITA); Trushar Shah , Prasad Peteti, Praveen R Reddy, Ibrahima Sissoko, Eva Weltzien, Isabel Vales, Suyah Patil (ICRISAT) ; Mauleon Ramil , Nikki Borgia, Ruaraidh Sackville-Hamilton (IRRI); Alberto Fabio Guerero, Steve Beebe, Roland Chirwa (CIAT). We would also like to thank Generation Challenge Programme (GCP) for providing the fund for this collaborative crop ontology development and implementation project work.
Uncontrolled Keywords: Crop Ontology, breeding trait, plant phenotype, trait dictionaries, breeding field book, data annotation, integrated breeding platform, crop community of practice
Author Affiliation: Genetic Resources Program,Centro Internacional de Mejoramiento de Maizy Trigo,Texcoco,Edo.deMéxico,Mexico
Subjects: Crop Improvement > Plant Breeding
Divisions: General
Depositing User: Mr Siva Shankar
Date Deposited: 04 Sep 2012 10:32
Last Modified: 04 Sep 2012 10:32
Official URL: http://dx.doi.org/10.3389/fphys.2012.00326
URI: http://eprints.icrisat.ac.in/id/eprint/7702

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